With its highly developed capacity to detect patterns in data, Perl has become one of the most popular languages for biological data analysis. But if you're a biologist with little or no programming experience, starting out in Perl can be a challe
A motif is a pair of non-overlapping sequences with very similar shapes in a time series. We study the online top- k most similar motif discovery problem. A special case of this problem corresponding to k = 1 was investigated in the literature by Mu
Stanford 大学--Analysis of Networks课程13-19章
Handouts
Info Sheet
Lecture 01 - 09/25 Course Introduction and Structure of Graphs
Lecture 02 - 09/27 Measuring Networks, and Random Graph Model
Lecture 03 - 10/02 Link Analysis: PageRank
Lect
The identification of potential regulatory motifs in new
sequence data is increasingly important for experimental
design. Those motifs are commonly located by
matches to IUPAC strings derived from consensus
sequences. Although this method is simple a
图案标记（OOP）
一个在外显子及其5'和3'内含子图像上绘制蛋白质结合基序的Python脚本
最多可处理六个图案，其中可能包含简并碱基（IUPAC符号）。
以svg格式输出单个图形。
使用以下参数从命令行调用motif-mark-oop.py ：
-f, --fasta FASTA file containing sequences of interest
-m, --motifs Text file containing up to six motifs, one mot
